John Lynham

Global impacts of drifting fish aggregating devices on marine protected areas

Thu, 01 Jan 2026 00:00:00 +0000

Add the full text or supplementary notes for the publication here using Markdown formatting.

Climate-resilient fisheries are more resilient in general

Wed, 01 Jan 2025 00:00:00 +0000

Add the full text or supplementary notes for the publication here using Markdown formatting.

FishNet: Deep Neural Networks for Low-Cost Fish Stock Estimation

Mon, 01 Jul 2024 00:00:00 +0000

A global test of MPA spillover benefits to recreational fisheries

Mon, 01 Jan 2024 00:00:00 +0000

Comparing access to US marine and terrestrial protected areas

Mon, 01 Jan 2024 00:00:00 +0000

Evidence of spillover benefits from large-scale marine protected areas to purse seine fisheries

Mon, 01 Jan 2024 00:00:00 +0000

Impact of Implementing Ex-Foreign Ship Moratorium Policy on Tuna Fishing Business in Benoa, Bali

Mon, 01 Jan 2024 00:00:00 +0000

Add the full text or supplementary notes for the publication here using Markdown formatting.

The Value of Mangroves to Domestic Tourists and Local Households in South Sulawesi, Indonesia

Mon, 01 Jan 2024 00:00:00 +0000

Tiebout sorting in online communities

Mon, 01 Jan 2024 00:00:00 +0000

Ranking researchers: evidence from Indonesia

Sun, 01 Jan 2023 00:00:00 +0000

Resource booms and group punishment in a coupled social-ecological system

Sun, 01 Jan 2023 00:00:00 +0000

The charisma premium: Iconic individuals and wildlife values

Sun, 01 Jan 2023 00:00:00 +0000

Spillover benefits from the world’s largest fully protected MPA

Sat, 01 Oct 2022 00:00:00 +0000

Avoiding critical thresholds through effective monitoring

Sat, 01 Jan 2022 00:00:00 +0000

Fishing activity before closure, during closure, and after reopening of the Northeast Canyons and Seamounts Marine National Monument

Sat, 01 Jan 2022 00:00:00 +0000

Coastal armoring and sinking property values: the case of seawalls in California

Fri, 01 Jan 2021 00:00:00 +0000

Detecting religion from space: Nyepi Day in Bali

Fri, 01 Jan 2021 00:00:00 +0000

Importance of equitable cost sharing in the Convention on Biological Diversity's protected area agenda

Fri, 01 Jan 2021 00:00:00 +0000

Reply to “Catch rate composition affects assessment of protected area impacts”

Fri, 01 Jan 2021 00:00:00 +0000

palmerpenguins

Thu, 11 Jun 2020 00:00:00 +0000

stat545.com

Tue, 21 Apr 2020 00:00:00 +0000

This online book contains a full course where users can learn to:

explore, groom, visualize, and analyze data,
make all of that reproducible, reusable, and shareable,
using R.

I led the effort, along with course author Jenny Bryan and RStudio intern Grace Lawley, to port a vintage R Markdown website into bookdown. I worked with my former intern, Desirée De Leon, to design the style of the bookdown website.

tidymodels.org

Tue, 21 Apr 2020 00:00:00 +0000

The tidymodels framework is a collection of R packages for modeling and machine learning using tidyverse principles. This website was built with Hugo, using a theme I developed and maintain. I worked with my former intern, Desirée De Leon, to design the style of the website.

Introduction to Machine Learning with the Tidyverse

Mon, 27 Jan 2020 00:00:00 +0000

These workshops provide a gentle introduction to supervised machine learning: concepts, methods, and R code. Participants learn how to train and assess predictive models with several common machine learning algorithms, as well as how to do feature engineering to improve the predictive accuracy of their models. We focus on teaching intuitive explanations of the models and best practices for predictive modeling. Along the way, we introduce several core tidymodels packages, which provide a grammar for modeling that makes it easy to the right thing, and harder to accidentally do the wrong thing.

See the workshop websites for more, including links to the GitHub repositories for all workshop materials.

Can demand-side management replicate a size limit in a small-scale fishery?

Wed, 01 Jan 2020 00:00:00 +0000

Communication, Expectations, and Trust: An Experiment with Three Media

Wed, 01 Jan 2020 00:00:00 +0000

Environmental market design for large-scale marine conservation

Wed, 01 Jan 2020 00:00:00 +0000

Impact of two of the world's largest protected areas on longline fishery catch rates

Wed, 01 Jan 2020 00:00:00 +0000

Opportunities for agent-based modelling in human dimensions of fisheries

Wed, 01 Jan 2020 00:00:00 +0000

Risk preferences after a typhoon: An artefactual field experiment with fishers in the Philippines

Wed, 01 Jan 2020 00:00:00 +0000

education.rstudio.com

Tue, 24 Sep 2019 00:00:00 +0000

RStudio’s mission is:

“To equip everyone, regardless of means, to participate in a global economy that rewards data literacy.”

Our education team supports this mission broadly by supporting people who want to learn R (or learn new things in R), and those who want to teach them. This website is designed for both. This website was built with Hugo, using a theme I developed and maintain. I worked with my former intern, Desirée De Leon, to create the original artwork we used for the website.

R Markdown for Medicine

Thu, 12 Sep 2019 00:00:00 +0000

Starting with a mock clinical trial dataset, we’ll use R Markdown to combine prose, R code, and figures and tables created with R code into a nicely formatted and reproducible final manuscript.

For the 2019 R / Medicine conference.

Projects

Tue, 01 Jan 2019 00:00:00 +0000

Resume

Tue, 01 Jan 2019 00:00:00 +0000

Talks & Workshops

Tue, 01 Jan 2019 00:00:00 +0000

Vog: using volcanic eruptions to estimate the health costs of particulates

Tue, 01 Jan 2019 00:00:00 +0000

Broad threat to humanity from cumulative climate hazards intensified by greenhouse gas emissions

Mon, 01 Jan 2018 00:00:00 +0000

Does the allocation of property rights matter in the commons?

Mon, 01 Jan 2018 00:00:00 +0000

Does the paradox of plenty exist? Experimental evidence on the curse of resource abundance

Mon, 01 Jan 2018 00:00:00 +0000

Facebook-to-Facebook: online communication and economic cooperation

Mon, 01 Jan 2018 00:00:00 +0000

Rapid and lasting gains from solving illegal fishing

Mon, 01 Jan 2018 00:00:00 +0000

Reply to ‘Achieving sustainable and equitable fisheries requires nuanced policies not silver bullets’

Mon, 01 Jan 2018 00:00:00 +0000

Labhub

Thu, 14 Sep 2017 00:00:00 +0000

In this workshop, Dr. Alison Hill and Robin Champieux demonstrated tools and methods for building transparency within a lab, and onboarding new graduate students and postdocs. We provided a template GitHub repository and code of conduct designed to facilitate a healthy and productive learning and research environment. You are encouraged to use these tools to communicate expectations, document protocols, receive feedback, and facilitate the long-term value of students’ and trainees’ contributions.

Labhub is a work in progress. We created this repository as an education and demonstration tool for faculty, postdocs, and students curious about how documentation, open science workflows, and tools like Github can contribute to a healthy and productive research environment. Your ideas and contributions are welcome!

Up & Running with blogdown

Thu, 14 Sep 2017 00:00:00 +0000

We will cover:

The blogdown R package
Hugo themes
Adding content to personalize your site
Posting
Don’t want to blog? / just want to knit?
Customizing themes
Troubleshooting common problems
Deployment options and recommendations
Domain options available through RStudio/rbind

If you are planning on attending this workshop, please click on the HTML link above for how to prepare before the workshop.

Costly stakeholder participation creates inertia in marine ecosystems

Sun, 01 Jan 2017 00:00:00 +0000

Identifying peer effects using gold rushers

Sun, 01 Jan 2017 00:00:00 +0000

The 1960 tsunami in Hawaii: long-term consequences of a coastal disaster

Sun, 01 Jan 2017 00:00:00 +0000

Code Your Graph Workshop

Fri, 24 Jun 2016 00:00:00 +0000

Advanced R Markdown